Index

A

Alignment (class in mygfa)

AlignOp (class in mygfa)

C

chop() (mygfa.Strand method)

D

drop_overlaps() (mygfa.Path method)

E

emit() (mygfa.Graph method)

F

from_ (mygfa.Link attribute)

G

Graph (class in mygfa)

H

Handle (class in mygfa)

headers (mygfa.Graph attribute)

L

Link (class in mygfa)

links (mygfa.Graph attribute) linkstr() (mygfa.Handle method)

M

module mygfa

mygfa module

N

name (mygfa.Handle attribute) (mygfa.Path attribute) (mygfa.Segment attribute)

O

olaps (mygfa.Path attribute)

ori (mygfa.Handle attribute) overlap (mygfa.Link attribute)

P

parse() (mygfa.Alignment class method) (mygfa.Graph class method) (mygfa.Handle class method) (mygfa.Link class method) (mygfa.Path class method) (mygfa.Segment class method) (mygfa.Strand class method)

parse_inner() (mygfa.Link class method) (mygfa.Path class method) (mygfa.Segment class method) Path (class in mygfa) paths (mygfa.Graph attribute)

R

rev() (mygfa.Handle method) (mygfa.Link method)

revcomp() (mygfa.Segment method) (mygfa.Strand method)

S

Segment (class in mygfa) segments (mygfa.Graph attribute) (mygfa.Path attribute)

seq (mygfa.Segment attribute) Strand (class in mygfa)

T

to_ (mygfa.Link attribute)